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Raktim Mitra

Postdoctoral Scholar, Institute for Protein Design, UW

About Me

Institute for Protein Design

I am a computational biologist working at the interface of protein design, structural biology, and machine learning. At the Institute for Protein Design, University of Washington, I develop novel AI-driven methods to rationally design proteins with the ability to bind specific nucleic acid sequences. My goal is to push the boundaries of biomolecular engineering to create functional molecules that can revolutionize gene therapy, diagnostics, and biotechnology. I am particularly interested in protein-DNA/RNA interactions, generative modeling, and the integration of physics-based and deep learning approaches for molecular design.

Research Interests

Publications

DeepPBS: Predicting protein-DNA binding specificity using AI. Nature Methods, 2024.
RNAproDB: Interactive database for protein-RNA interactions. J Mol Biol, 2025.

See full list on Google Scholar.

Contact

Feel free to reach out via LinkedIn or Twitter for collaborations or conversations.